HL_8RD8_102

3D structure

PDB id

8RD8 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factors Balon and RaiA (structure 1).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UAACAA

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RD8_102 not in the Motif Atlas

Geometric match to HL_6UFM_005

Geometric discrepancy: 0.2248

The information below is about HL_6UFM_005

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_12125.3

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8RD8|1|Z2|U|2194
8RD8|1|Z2|A|2195
8RD8|1|Z2|A|2196
8RD8|1|Z2|C|2197
8RD8|1|Z2|A|2198
8RD8|1|Z2|A|2199

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain WD

Large ribosomal subunit protein bL28