HL_8RDW_006

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CAUAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDW_006 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1508

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8RDW|1|Z2|C|143
8RDW|1|Z2|A|144
8RDW|1|Z2|U|145
8RDW|1|Z2|A|146
8RDW|1|Z2|A|147
8RDW|1|Z2|G|148

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Sn

Large ribosomal subunit protein uL23