HL_8RDW_012

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

GUGAUAGUC

Length

9 nucleotides

Bulged bases

8RDW|1|Z2|G|316, 8RDW|1|Z2|A|317, 8RDW|1|Z2|U|318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDW_012 not in the Motif Atlas

Homologous match to HL_7RQB_012

Geometric discrepancy: 0.1049

The information below is about HL_7RQB_012

Detailed Annotation

T-loop with unstacked turn

Broad Annotation

T-loop

Motif group

HL_08002.9

Basepair signature

cWW-tWH-F-F

Number of instances in this motif group

19

Unit IDs

8RDW|1|Z2|G|314
8RDW|1|Z2|U|315
8RDW|1|Z2|G|316
8RDW|1|Z2|A|317
8RDW|1|Z2|U|318
8RDW|1|Z2|A|319
8RDW|1|Z2|G|320
8RDW|1|Z2|U|321
8RDW|1|Z2|C|322

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain E9

Large ribosomal subunit protein uL4

Chain TI

Large ribosomal subunit protein uL24