HL_8RDW_019

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CGUUUAG

Length

7 nucleotides

Bulged bases

8RDW|1|Z2|U|598, 8RDW|1|Z2|U|600

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDW_019 not in the Motif Atlas

Homologous match to HL_5J7L_151

Geometric discrepancy: 0.1824

The information below is about HL_5J7L_151

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80922.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

3

Unit IDs

8RDW|1|Z2|C|596
8RDW|1|Z2|G|597
8RDW|1|Z2|U|598
8RDW|1|Z2|U|599
8RDW|1|Z2|U|600
8RDW|1|Z2|A|601
8RDW|1|Z2|G|602

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain E9

Large ribosomal subunit protein uL4