HL_8RDW_024

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

UGAAAGG

Length

7 nucleotides

Bulged bases

8RDW|1|Z2|A|766, 8RDW|1|Z2|G|769

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDW_024 not in the Motif Atlas

Homologous match to HL_5J7L_156

Geometric discrepancy: 0.0444

The information below is about HL_5J7L_156

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87954.2

Basepair signature

cWW-tSW-F

Number of instances in this motif group

7

Unit IDs

8RDW|1|Z2|U|764
8RDW|1|Z2|G|765
8RDW|1|Z2|A|766
8RDW|1|Z2|A|767
8RDW|1|Z2|A|768
8RDW|1|Z2|G|769
8RDW|1|Z2|G|770

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Cl

Large ribosomal subunit protein uL2