HL_8RDW_028

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

GAAACAAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDW_028 not in the Motif Atlas

Homologous match to HL_5J7L_160

Geometric discrepancy: 0.079

The information below is about HL_5J7L_160

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_42998.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8RDW|1|Z2|G|962
8RDW|1|Z2|A|963
8RDW|1|Z2|A|964
8RDW|1|Z2|A|965
8RDW|1|Z2|C|966
8RDW|1|Z2|A|967
8RDW|1|Z2|A|968
8RDW|1|Z2|C|969

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain PO

Large ribosomal subunit protein bL20

Chain Qb

Large ribosomal subunit protein bL21

Chain YW

Large ribosomal subunit protein uL30