HL_8RDW_038

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

8RDW|1|Z2|C|1477, 8RDW|1|Z2|U|1481

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDW_038 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.1268

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8RDW|1|Z2|G|1476
8RDW|1|Z2|C|1477
8RDW|1|Z2|A|1478
8RDW|1|Z2|A|1479
8RDW|1|Z2|A|1480
8RDW|1|Z2|U|1481
8RDW|1|Z2|C|1482

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain Cl

Large ribosomal subunit protein uL2