HL_8RDW_051
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- GUGAAGAUGC
- Length
- 10 nucleotides
- Bulged bases
- 8RDW|1|Z2|A|2016, 8RDW|1|Z2|A|2017, 8RDW|1|Z2|G|2018
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RDW_051 not in the Motif Atlas
- Homologous match to HL_4WF9_047
- Geometric discrepancy: 0.1187
- The information below is about HL_4WF9_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_78372.1
- Basepair signature
- cWW-tWH-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8RDW|1|Z2|G|2013
8RDW|1|Z2|U|2014
8RDW|1|Z2|G|2015
8RDW|1|Z2|A|2016
8RDW|1|Z2|A|2017
8RDW|1|Z2|G|2018
8RDW|1|Z2|A|2019
8RDW|1|Z2|U|2020
8RDW|1|Z2|G|2021
8RDW|1|Z2|C|2022
Current chains
- Chain Z2
- 23S rRNA
Nearby chains
- Chain Af
- Large ribosomal subunit protein uL3
- Chain Qb
- Large ribosomal subunit protein bL21
- Chain aA
- Large ribosomal subunit protein bL32
Coloring options: