HL_8RDW_054

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8RDW|1|Z2|G|2233

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDW_054 not in the Motif Atlas

Homologous match to HL_7RQB_053

Geometric discrepancy: 0.0966

The information below is about HL_7RQB_053

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RDW|1|Z2|C|2231
8RDW|1|Z2|U|2232
8RDW|1|Z2|G|2233
8RDW|1|Z2|G|2234
8RDW|1|Z2|G|2235
8RDW|1|Z2|G|2236
8RDW|1|Z2|C|2237
8RDW|1|Z2|G|2238
8RDW|1|Z2|G|2239

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain B

Methyl-accepting chemotaxis protein

Chain Lg

Large ribosomal subunit protein uL16

Chain VH

Large ribosomal subunit protein bL27