HL_8RDW_061

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

AGUUCAUAU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDW_061 not in the Motif Atlas

Homologous match to HL_5J7L_193

Geometric discrepancy: 0.1489

The information below is about HL_5J7L_193

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_32735.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8RDW|1|Z2|A|2454
8RDW|1|Z2|G|2455
8RDW|1|Z2|U|2456
8RDW|1|Z2|U|2457
8RDW|1|Z2|C|2458
8RDW|1|Z2|A|2459
8RDW|1|Z2|U|2460
8RDW|1|Z2|A|2461
8RDW|1|Z2|U|2462

Current chains

Chain Z2

23S rRNA

Nearby chains

Chain B

Methyl-accepting chemotaxis protein

Chain GR

Large ribosomal subunit protein uL6

Chain ep

Large ribosomal subunit protein bL36