HL_8RDW_075

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

UGAGAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDW_075 not in the Motif Atlas

Homologous match to HL_4LFB_007

Geometric discrepancy: 0.0671

The information below is about HL_4LFB_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8RDW|1|iN|U|339
8RDW|1|iN|G|340
8RDW|1|iN|A|341
8RDW|1|iN|G|342
8RDW|1|iN|A|343
8RDW|1|iN|G|344

Current chains

Chain iN

16S rRNA

Nearby chains

Chain Dm

Small ribosomal subunit protein uS4

Chain E5

Small ribosomal subunit protein uS5

Chain QZ

Small ribosomal subunit protein uS17