HL_8RDW_086

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CUAACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDW_086 not in the Motif Atlas

Homologous match to HL_4LFB_019

Geometric discrepancy: 0.0604

The information below is about HL_4LFB_019

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8RDW|1|iN|C|906
8RDW|1|iN|U|907
8RDW|1|iN|A|908
8RDW|1|iN|A|909
8RDW|1|iN|C|910
8RDW|1|iN|G|911

Current chains

Chain iN

16S rRNA

Nearby chains

Chain BQ

Small ribosomal subunit protein uS8

Chain E5

Small ribosomal subunit protein uS5