HL_8RDW_089

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

AGAGAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDW_089 not in the Motif Atlas

Homologous match to HL_4LFB_022

Geometric discrepancy: 0.2846

The information below is about HL_4LFB_022

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

8RDW|1|iN|A|1056
8RDW|1|iN|G|1057
8RDW|1|iN|A|1058
8RDW|1|iN|G|1059
8RDW|1|iN|A|1060
8RDW|1|iN|U|1061

Current chains

Chain iN

16S rRNA

Nearby chains

Chain HK

Small ribosomal subunit protein uS14

Chain SP

Small ribosomal subunit protein uS19