HL_8RDW_094

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

UGACAAA

Length

7 nucleotides

Bulged bases

8RDW|1|iN|C|1213

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDW_094 not in the Motif Atlas

Homologous match to HL_5J7L_026

Geometric discrepancy: 0.2584

The information below is about HL_5J7L_026

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_93535.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8RDW|1|iN|U|1210
8RDW|1|iN|G|1211
8RDW|1|iN|A|1212
8RDW|1|iN|C|1213
8RDW|1|iN|A|1214
8RDW|1|iN|A|1215
8RDW|1|iN|A|1216

Current chains

Chain iN

16S rRNA

Nearby chains

Chain A4

Small ribosomal subunit protein uS2