HL_8RDW_096

3D structure

PDB id

8RDW (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).

Experimental method

ELECTRON MICROSCOPY

Resolution

2.74 Å

Loop

Sequence

CUGCAACUCG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RDW_096 not in the Motif Atlas

Homologous match to HL_4LFB_029

Geometric discrepancy: 0.0944

The information below is about HL_4LFB_029

Detailed Annotation

T-loop with 3 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_93658.1

Basepair signature

cWW-tWH-F-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8RDW|1|iN|C|1359
8RDW|1|iN|U|1360
8RDW|1|iN|G|1361
8RDW|1|iN|C|1362
8RDW|1|iN|A|1363
8RDW|1|iN|A|1364
8RDW|1|iN|C|1365
8RDW|1|iN|U|1366
8RDW|1|iN|C|1367
8RDW|1|iN|G|1368

Current chains

Chain iN

16S rRNA

Nearby chains

Chain HK

Small ribosomal subunit protein uS14

Chain MM

Small ribosomal subunit protein uS13

Chain SP

Small ribosomal subunit protein uS19