HL_8RDW_100
3D structure
- PDB id
- 8RDW (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of P. urativorans 70S ribosome in complex with hibernation factor Balon and EF-Tu(GDP) (structure 3).
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.74 Å
Loop
- Sequence
- AUCCCUUCCCGAACU
- Length
- 15 nucleotides
- Bulged bases
- 8RDW|1|D8|C|39
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RDW_100 not in the Motif Atlas
- Homologous match to HL_4V9F_074
- Geometric discrepancy: 0.1063
- The information below is about HL_4V9F_074
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.3
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8RDW|1|D8|A|32
8RDW|1|D8|U|33
8RDW|1|D8|C|34
8RDW|1|D8|C|35
8RDW|1|D8|C|36
8RDW|1|D8|U|37
8RDW|1|D8|U|38
8RDW|1|D8|C|39
8RDW|1|D8|C|40
8RDW|1|D8|C|41
8RDW|1|D8|G|42
8RDW|1|D8|A|43
8RDW|1|D8|A|44
8RDW|1|D8|C|45
8RDW|1|D8|U|46
Current chains
- Chain D8
- 5S rRNA
Nearby chains
- Chain F7
- Large ribosomal subunit protein uL5
- Chain Nc
- Large ribosomal subunit protein uL18
- Chain Z2
- Large subunit ribosomal RNA; LSU rRNA
- Chain fJ
- Large ribosomal subunit protein bL31B
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