HL_8RJB_004
3D structure
- PDB id
- 8RJB (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.69243 Å
Loop
- Sequence
- CGCGGCG
- Length
- 7 nucleotides
- Bulged bases
- 8RJB|1|K|G|134, 8RJB|1|K|G|135
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RJB_004 not in the Motif Atlas
- Geometric match to HL_5U3G_001
- Geometric discrepancy: 0.1202
- The information below is about HL_5U3G_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.5
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 19
Unit IDs
8RJB|1|K|C|131
8RJB|1|K|G|132
8RJB|1|K|C|133
8RJB|1|K|G|134
8RJB|1|K|G|135
8RJB|1|K|C|136
8RJB|1|K|G|137
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain N
- Ribosomal protein L15
- Chain h
- 60S ribosomal protein L35
- Chain j
- Ribosomal protein L37
- Chain v
- 5.8S ribosomal RNA; 5.8S rRNA
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