HL_8RJB_032

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

CAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACG

Length

40 nucleotides

Bulged bases

8RJB|1|K|C|2094, 8RJB|1|K|U|2267, 8RJB|1|K|C|2269

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJB|1|K|C|2087
8RJB|1|K|A|2088
8RJB|1|K|G|2089
8RJB|1|K|U|2090
8RJB|1|K|C|2091
8RJB|1|K|G|2092
8RJB|1|K|G|2093
8RJB|1|K|C|2094
8RJB|1|K|A|2095
8RJB|1|K|G|2096
8RJB|1|K|A|2097
8RJB|1|K|G|2098
8RJB|1|K|C|2099
8RJB|1|K|G|2100
8RJB|1|K|A|2101
8RJB|1|K|G|2102
8RJB|1|K|A|2103
8RJB|1|K|A|2104
8RJB|1|K|A|2105
8RJB|1|K|G|2106
8RJB|1|K|A|2107
8RJB|1|K|G|2108
8RJB|1|K|A|2109
8RJB|1|K|G|2110
8RJB|1|K|U|2111
8RJB|1|K|G|2112
8RJB|1|K|G|2113
8RJB|1|K|C|2258
8RJB|1|K|G|2259
8RJB|1|K|C|2260
8RJB|1|K|G|2261
8RJB|1|K|G|2262
8RJB|1|K|A|2263
8RJB|1|K|C|2264
8RJB|1|K|G|2265
8RJB|1|K|C|2266
8RJB|1|K|U|2267
8RJB|1|K|A|2268
8RJB|1|K|C|2269
8RJB|1|K|G|2270

Current chains

Chain K

28S rRNA

Nearby chains

Chain C

Large ribosomal subunit protein uL4

Chain E

60S ribosomal protein L6

Chain F

Ribosomal Protein uL30

Chain Q

Ribosomal protein L26

Chain b

60S ribosomal protein L29

Chain r

60S ribosomal protein L28