HL_8RJB_056

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8RJB|1|K|G|4195

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJB_056 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1071

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

8RJB|1|K|C|4193
8RJB|1|K|U|4194
8RJB|1|K|G|4195
8RJB|1|K|G|4196
8RJB|1|K|G|4197
8RJB|1|K|G|4198
8RJB|1|K|C|4199
8RJB|1|K|G|4200
8RJB|1|K|G|4201

Current chains

Chain K

28S rRNA

Nearby chains

Chain I

60S ribosomal protein L10

Chain b

60S ribosomal protein L29

Chain q

Transfer RNA; tRNA