HL_8RJB_072

3D structure

PDB id

8RJB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-RAMP4

Experimental method

ELECTRON MICROSCOPY

Resolution

2.69243 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8RJB|1|K|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJB_072 not in the Motif Atlas

Geometric match to HL_5J7L_201

Geometric discrepancy: 0.1034

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

8RJB|1|K|G|4975
8RJB|1|K|U|4976
8RJB|1|K|A|4977
8RJB|1|K|G|4978
8RJB|1|K|A|4979
8RJB|1|K|C|4980
8RJB|1|K|G|4981
8RJB|1|K|A|4982
8RJB|1|K|C|4983

Current chains

Chain K

28S rRNA

Nearby chains

Chain P

uL22

Chain w

Ribosomal protein L3