HL_8RJD_012

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

UCCCGUCG

Length

8 nucleotides

Bulged bases

8RJD|1|K|G|638

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJD|1|K|U|520
8RJD|1|K|C|521
8RJD|1|K|C|522
8RJD|1|K|C|523
8RJD|1|K|G|638
8RJD|1|K|U|639
8RJD|1|K|C|640
8RJD|1|K|G|641

Current chains

Chain K

28S rRNA

Nearby chains

Chain L

60S ribosomal protein L13