HL_8RJD_018
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- UGAAGG
- Length
- 6 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RJD_018 not in the Motif Atlas
- Homologous match to HL_8C3A_016
- Geometric discrepancy: 0.0624
- The information below is about HL_8C3A_016
- Detailed Annotation
- GNRA
- Broad Annotation
- No text annotation
- Motif group
- HL_37824.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 360
Unit IDs
8RJD|1|K|U|1389
8RJD|1|K|G|1390
8RJD|1|K|A|1391
8RJD|1|K|A|1392
8RJD|1|K|G|1393
8RJD|1|K|G|1394
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L13
- Chain Q
- Ribosomal protein L18
- Chain a
- 60S ribosomal protein L27a
- Chain i
- 60S ribosomal protein L36
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