HL_8RJD_026

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

8RJD|1|K|A|1765, 8RJD|1|K|C|1768

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJD_026 not in the Motif Atlas

Homologous match to HL_5TBW_023

Geometric discrepancy: 0.5713

The information below is about HL_5TBW_023

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8RJD|1|K|C|1763
8RJD|1|K|G|1764
8RJD|1|K|A|1765
8RJD|1|K|A|1766
8RJD|1|K|A|1767
8RJD|1|K|C|1768
8RJD|1|K|G|1769

Current chains

Chain K

28S rRNA

Nearby chains