HL_8RJD_031

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

GAGUGUGUAACAACUC

Length

16 nucleotides

Bulged bases

8RJD|1|K|A|2002

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8RJD|1|K|G|2001
8RJD|1|K|A|2002
8RJD|1|K|G|2003
8RJD|1|K|U|2004
8RJD|1|K|G|2005
8RJD|1|K|U|2006
8RJD|1|K|G|2007
8RJD|1|K|U|2008
8RJD|1|K|A|2009
8RJD|1|K|A|2010
8RJD|1|K|C|2011
8RJD|1|K|A|2012
8RJD|1|K|A|2013
8RJD|1|K|C|2014
8RJD|1|K|U|2015
8RJD|1|K|C|2016

Current chains

Chain K

28S rRNA

Nearby chains

Chain m

eL40