HL_8RJD_032
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- CAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACG
- Length
- 40 nucleotides
- Bulged bases
- 8RJD|1|K|C|2094, 8RJD|1|K|U|2267, 8RJD|1|K|C|2269
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8RJD|1|K|C|2087
8RJD|1|K|A|2088
8RJD|1|K|G|2089
8RJD|1|K|U|2090
8RJD|1|K|C|2091
8RJD|1|K|G|2092
8RJD|1|K|G|2093
8RJD|1|K|C|2094
8RJD|1|K|A|2095
8RJD|1|K|G|2096
8RJD|1|K|A|2097
8RJD|1|K|G|2098
8RJD|1|K|C|2099
8RJD|1|K|G|2100
8RJD|1|K|A|2101
8RJD|1|K|G|2102
8RJD|1|K|A|2103
8RJD|1|K|A|2104
8RJD|1|K|A|2105
8RJD|1|K|G|2106
8RJD|1|K|A|2107
8RJD|1|K|G|2108
8RJD|1|K|A|2109
8RJD|1|K|G|2110
8RJD|1|K|U|2111
8RJD|1|K|G|2112
8RJD|1|K|G|2113
8RJD|1|K|C|2258
8RJD|1|K|G|2259
8RJD|1|K|C|2260
8RJD|1|K|G|2261
8RJD|1|K|G|2262
8RJD|1|K|A|2263
8RJD|1|K|C|2264
8RJD|1|K|G|2265
8RJD|1|K|C|2266
8RJD|1|K|U|2267
8RJD|1|K|A|2268
8RJD|1|K|C|2269
8RJD|1|K|G|2270
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain C
- Large ribosomal subunit protein uL4
- Chain E
- 60S ribosomal protein L6
- Chain F
- Ribosomal Protein uL30
- Chain Q
- Ribosomal protein L18
- Chain b
- 60S ribosomal protein L29
- Chain r
- 60S ribosomal protein L28
Coloring options: