HL_8RJD_034
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- ACGAGAACU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RJD_034 not in the Motif Atlas
- Homologous match to HL_8C3A_031
- Geometric discrepancy: 0.1374
- The information below is about HL_8C3A_031
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_43993.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8RJD|1|K|A|2376
8RJD|1|K|C|2377
8RJD|1|K|G|2378
8RJD|1|K|A|2379
8RJD|1|K|G|2380
8RJD|1|K|A|2381
8RJD|1|K|A|2382
8RJD|1|K|C|2383
8RJD|1|K|U|2384
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain 4
- Stress-associated endoplasmic reticulum protein
- Chain P
- uL22
- Chain R
- Ribosomal protein L19
- Chain d
- 60S ribosomal protein L31
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