HL_8RJD_038
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- GUUCAGAUCC
- Length
- 10 nucleotides
- Bulged bases
- 8RJD|1|K|U|2530, 8RJD|1|K|C|2531
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RJD_038 not in the Motif Atlas
- Homologous match to HL_5TBW_035
- Geometric discrepancy: 0.0844
- The information below is about HL_5TBW_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8RJD|1|K|G|2523
8RJD|1|K|U|2524
8RJD|1|K|U|2525
8RJD|1|K|C|2526
8RJD|1|K|A|2527
8RJD|1|K|G|2528
8RJD|1|K|A|2529
8RJD|1|K|U|2530
8RJD|1|K|C|2531
8RJD|1|K|C|2532
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain 1
- Protein transport protein Sec61 subunit alpha isoform 1
- Chain R
- Ribosomal protein L19
- Chain X
- Large ribosomal subunit protein uL23 N-terminal domain-containing protein
- Chain g
- 60S ribosomal protein L34
Coloring options: