HL_8RJD_043
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- GGUUCC
- Length
- 6 nucleotides
- Bulged bases
- 8RJD|1|K|C|2709
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RJD_043 not in the Motif Atlas
- Geometric match to HL_2Y9H_003
- Geometric discrepancy: 0.1381
- The information below is about HL_2Y9H_003
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.6
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 21
Unit IDs
8RJD|1|K|G|2705
8RJD|1|K|G|2706
8RJD|1|K|U|2707
8RJD|1|K|U|2708
8RJD|1|K|C|2709
8RJD|1|K|C|2710
Current chains
- Chain K
- 28S rRNA
Nearby chains
- Chain 1
- Protein transport protein Sec61 subunit alpha isoform 1
- Chain 4
- Stress-associated endoplasmic reticulum protein
- Chain R
- Ribosomal protein L19
- Chain X
- Large ribosomal subunit protein uL23 N-terminal domain-containing protein
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