HL_8RJD_051

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

CGCGGCG

Length

7 nucleotides

Bulged bases

8RJD|1|K|C|3673

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJD_051 not in the Motif Atlas

Homologous match to HL_8C3A_047

Geometric discrepancy: 0.263

The information below is about HL_8C3A_047

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8RJD|1|K|C|3668
8RJD|1|K|G|3669
8RJD|1|K|C|3670
8RJD|1|K|G|3671
8RJD|1|K|G|3672
8RJD|1|K|C|3673
8RJD|1|K|G|3674

Current chains

Chain K

28S rRNA

Nearby chains

Chain A

Ribosomal protein L8

Chain G

60S ribosomal protein L7a

Chain N

Ribosomal protein L15