HL_8RJD_055

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8RJD|1|K|A|3876, 8RJD|1|K|A|3877, 8RJD|1|K|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJD_055 not in the Motif Atlas

Homologous match to HL_8C3A_051

Geometric discrepancy: 0.0699

The information below is about HL_8C3A_051

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_90642.8

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

7

Unit IDs

8RJD|1|K|G|3873
8RJD|1|K|G|3874
8RJD|1|K|G|3875
8RJD|1|K|A|3876
8RJD|1|K|A|3877
8RJD|1|K|C|3878
8RJD|1|K|G|3879
8RJD|1|K|G|3880
8RJD|1|K|G|3881
8RJD|1|K|C|3882

Current chains

Chain K

28S rRNA

Nearby chains

Chain e

Ribosomal protein L32

Chain w

Ribosomal protein L3