HL_8RJD_069

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

CUGAACGCCUCUAAG

Length

15 nucleotides

Bulged bases

8RJD|1|K|G|4694, 8RJD|1|K|C|4698

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJD_069 not in the Motif Atlas

Homologous match to HL_8C3A_068

Geometric discrepancy: 0.0699

The information below is about HL_8C3A_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56677.9

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8RJD|1|K|C|4688
8RJD|1|K|U|4689
8RJD|1|K|G|4690
8RJD|1|K|A|4691
8RJD|1|K|A|4692
8RJD|1|K|C|4693
8RJD|1|K|G|4694
8RJD|1|K|C|4695
8RJD|1|K|C|4696
8RJD|1|K|U|4697
8RJD|1|K|C|4698
8RJD|1|K|U|4699
8RJD|1|K|A|4700
8RJD|1|K|A|4701
8RJD|1|K|G|4702

Current chains

Chain K

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L9

Chain O

60S ribosomal protein L13a

Chain m

eL40