HL_8RJD_072

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8RJD|1|K|U|4976

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJD_072 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.0861

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8RJD|1|K|G|4975
8RJD|1|K|U|4976
8RJD|1|K|A|4977
8RJD|1|K|G|4978
8RJD|1|K|A|4979
8RJD|1|K|C|4980
8RJD|1|K|G|4981
8RJD|1|K|A|4982
8RJD|1|K|C|4983

Current chains

Chain K

28S rRNA

Nearby chains

Chain P

uL22

Chain d

60S ribosomal protein L31

Chain w

Ribosomal protein L3