HL_8RJD_075

3D structure

PDB id

8RJD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2

Experimental method

ELECTRON MICROSCOPY

Resolution

2.78574 Å

Loop

Sequence

CCUAACACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RJD_075 not in the Motif Atlas

Homologous match to HL_4TUE_034

Geometric discrepancy: 0.1258

The information below is about HL_4TUE_034

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

8RJD|1|q|C|31
8RJD|1|q|C|32
8RJD|1|q|U|33
8RJD|1|q|A|34
8RJD|1|q|A|35
8RJD|1|q|C|36
8RJD|1|q|A|37
8RJD|1|q|C|38
8RJD|1|q|G|39

Current chains

Chain q

P-site tRNA

Nearby chains