HL_8RJD_076
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- GUUCGAAAC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RJD_076 not in the Motif Atlas
- Homologous match to HL_6PMO_005
- Geometric discrepancy: 0.1667
- The information below is about HL_6PMO_005
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.4
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 143
Unit IDs
8RJD|1|q|G|53
8RJD|1|q|U|54
8RJD|1|q|U|55
8RJD|1|q|C|56
8RJD|1|q|G|57
8RJD|1|q|A|58
8RJD|1|q|A|59
8RJD|1|q|A|60
8RJD|1|q|C|61
Current chains
- Chain q
- P-site tRNA
Nearby chains
- Chain J
- 60S ribosomal protein L11
- Chain K
- Large subunit ribosomal RNA; LSU rRNA
- Chain o
- 60S ribosomal protein L36a-like
Coloring options: