HL_8RJD_081
3D structure
- PDB id
- 8RJD (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the rabbit 80S ribosome stalled on a 2-TMD rhodopsin intermediate in complex with Sec61-TRAP, open conformation 2
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.78574 Å
Loop
- Sequence
- CACUUG
- Length
- 6 nucleotides
- Bulged bases
- 8RJD|1|v|U|111
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RJD_081 not in the Motif Atlas
- Homologous match to HL_8C3A_076
- Geometric discrepancy: 0.2009
- The information below is about HL_8C3A_076
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_22523.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 13
Unit IDs
8RJD|1|v|C|107
8RJD|1|v|A|108
8RJD|1|v|C|109
8RJD|1|v|U|110
8RJD|1|v|U|111
8RJD|1|v|G|112
Current chains
- Chain v
- 5.8S rRNA
Nearby chains
- Chain K
- Large subunit ribosomal RNA; LSU rRNA
- Chain X
- Large ribosomal subunit protein uL23 N-terminal domain-containing protein
- Chain j
- Ribosomal protein L37
- Chain l
- 60S ribosomal protein L39-like
Coloring options: