HL_8RL2_003

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GCGGC

Length

5 nucleotides

Bulged bases

8RL2|1|L5|G|134, 8RL2|1|L5|G|135

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RL2_003 not in the Motif Atlas

Geometric match to HL_4YAZ_004

Geometric discrepancy: 0.2659

The information below is about HL_4YAZ_004

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_90436.2

Basepair signature

cWW-F

Number of instances in this motif group

46

Unit IDs

8RL2|1|L5|G|132
8RL2|1|L5|C|133
8RL2|1|L5|G|134
8RL2|1|L5|G|135
8RL2|1|L5|C|136

Current chains

Chain L5

28S rRNA

Nearby chains

Chain L8

5.8S ribosomal RNA; 5.8S rRNA

Chain LN

60S ribosomal protein L15

Chain Lh

60S ribosomal protein L35

Chain Lj

60S ribosomal protein L37