HL_8RL2_018

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

CUGGCGUG

Length

8 nucleotides

Bulged bases

8RL2|1|L5|G|1821

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RL2_018 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3946

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

8RL2|1|L5|C|1816
8RL2|1|L5|U|1817
8RL2|1|L5|G|1818
8RL2|1|L5|G|1819
8RL2|1|L5|C|1820
8RL2|1|L5|G|1821
8RL2|1|L5|U|1822
8RL2|1|L5|G|1823

Current chains

Chain L5

28S rRNA

Nearby chains