HL_8RL2_043

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

GGGAACGGGC

Length

10 nucleotides

Bulged bases

8RL2|1|L5|G|3875, 8RL2|1|L5|A|3876, 8RL2|1|L5|C|3878

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RL2_043 not in the Motif Atlas

Geometric match to HL_1WZ2_007

Geometric discrepancy: 0.0979

The information below is about HL_1WZ2_007

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8RL2|1|L5|G|3873
8RL2|1|L5|G|3874
8RL2|1|L5|G|3875
8RL2|1|L5|A|3876
8RL2|1|L5|A|3877
8RL2|1|L5|C|3878
8RL2|1|L5|G|3879
8RL2|1|L5|G|3880
8RL2|1|L5|G|3881
8RL2|1|L5|C|3882

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CC

Guanine nucleotide-binding protein-like 3

Chain LB

60S ribosomal protein L3

Chain Le

60S ribosomal protein L32