HL_8RL2_044

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

AGCCCCGAGGGGCU

Length

14 nucleotides

Bulged bases

8RL2|1|L5|G|4104

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RL2_044 not in the Motif Atlas

Geometric match to HL_8KAL_003

Geometric discrepancy: 0.3544

The information below is about HL_8KAL_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8RL2|1|L5|A|4098
8RL2|1|L5|G|4099
8RL2|1|L5|C|4100
8RL2|1|L5|C|4101
8RL2|1|L5|C|4102
8RL2|1|L5|C|4103
8RL2|1|L5|G|4104
8RL2|1|L5|A|4105
8RL2|1|L5|G|4106
8RL2|1|L5|G|4107
8RL2|1|L5|G|4108
8RL2|1|L5|G|4109
8RL2|1|L5|C|4110
8RL2|1|L5|U|4111

Current chains

Chain L5

28S rRNA

Nearby chains