HL_8RL2_047

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

CAGAAGGG

Length

8 nucleotides

Bulged bases

8RL2|1|L5|G|4272, 8RL2|1|L5|G|4275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RL2_047 not in the Motif Atlas

Geometric match to HL_5U3G_001

Geometric discrepancy: 0.0906

The information below is about HL_5U3G_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8RL2|1|L5|C|4270
8RL2|1|L5|A|4271
8RL2|1|L5|G|4272
8RL2|1|L5|A|4273
8RL2|1|L5|A|4274
8RL2|1|L5|G|4275
8RL2|1|L5|G|4276
8RL2|1|L5|G|4277

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CJ

Ribosome production factor 2 homolog

Chain LD

60S ribosomal protein L5