HL_8RL2_048

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

CAGUACG

Length

7 nucleotides

Bulged bases

8RL2|1|L5|G|4305, 8RL2|1|L5|U|4306, 8RL2|1|L5|C|4308

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RL2_048 not in the Motif Atlas

Geometric match to HL_4OOG_001

Geometric discrepancy: 0.163

The information below is about HL_4OOG_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

8RL2|1|L5|C|4303
8RL2|1|L5|A|4304
8RL2|1|L5|G|4305
8RL2|1|L5|U|4306
8RL2|1|L5|A|4307
8RL2|1|L5|C|4308
8RL2|1|L5|G|4309

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CB

Nucleolar GTP-binding protein 2

Chain CH

Ribosome biogenesis protein NSA2 homolog

Chain CJ

Ribosome production factor 2 homolog

Chain CK

Ribosome biogenesis regulatory protein homolog