HL_8RL2_049

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RL2_049 not in the Motif Atlas

Homologous match to HL_8C3A_060

Geometric discrepancy: 0.0942

The information below is about HL_8C3A_060

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8RL2|1|L5|U|4321
8RL2|1|L5|G|4322
8RL2|1|L5|A|4323
8RL2|1|L5|A|4324
8RL2|1|L5|A|4325
8RL2|1|L5|G|4326

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CH

Ribosome biogenesis protein NSA2 homolog

Chain CK

Ribosome biogenesis regulatory protein homolog

Chain LD

60S ribosomal protein L5