HL_8RL2_052

3D structure

PDB id

8RL2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human pre-60S - State 5

Experimental method

ELECTRON MICROSCOPY

Resolution

2.84 Å

Loop

Sequence

UUGUUCA

Length

7 nucleotides

Bulged bases

8RL2|1|L5|G|4499, 8RL2|1|L5|U|4500, 8RL2|1|L5|C|4502

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RL2_052 not in the Motif Atlas

Geometric match to HL_6AJK_001

Geometric discrepancy: 0.2017

The information below is about HL_6AJK_001

Detailed Annotation

Mini UNCG related

Broad Annotation

Mini UNCG related

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

8RL2|1|L5|U|4497
8RL2|1|L5|U|4498
8RL2|1|L5|G|4499
8RL2|1|L5|U|4500
8RL2|1|L5|U|4501
8RL2|1|L5|C|4502
8RL2|1|L5|A|4503

Current chains

Chain L5

28S rRNA

Nearby chains

Chain CB

Nucleolar GTP-binding protein 2

Chain CD

GTP-binding protein 4