HL_8RPY_006

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8RPY|1|A|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RPY_006 not in the Motif Atlas

Homologous match to HL_4WF9_006

Geometric discrepancy: 0.0852

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

22

Unit IDs

8RPY|1|A|G|194
8RPY|1|A|A|195
8RPY|1|A|A|196
8RPY|1|A|A|197
8RPY|1|A|C|198
8RPY|1|A|A|199
8RPY|1|A|U|200
8RPY|1|A|C|201

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15

Chain X

Large ribosomal subunit protein bL28