3D structure

PDB id
8RPY (explore in PDB, NAKB, or RNA 3D Hub)
Description
Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137
Experimental method
ELECTRON MICROSCOPY
Resolution
2.64 Å

Loop

Sequence
UUUUGUAUAA
Length
10 nucleotides
Bulged bases
8RPY|1|A|A|574
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8RPY_016 not in the Motif Atlas
Geometric match to HL_5J7L_150
Geometric discrepancy: 0.108
The information below is about HL_5J7L_150
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.8
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
140

Unit IDs

8RPY|1|A|U|566
8RPY|1|A|U|567
8RPY|1|A|U|568
8RPY|1|A|U|569
8RPY|1|A|G|570
8RPY|1|A|U|571
8RPY|1|A|A|572
8RPY|1|A|U|573
8RPY|1|A|A|574
8RPY|1|A|A|575

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain 0
Large ribosomal subunit protein bL32
Chain D
Large ribosomal subunit protein uL3
Chain L
Large ribosomal subunit protein uL15
Chain Q
Large ribosomal subunit protein bL20
Chain R
Large ribosomal subunit protein bL21

Coloring options:


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