HL_8RPY_020

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GGUAACAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RPY_020 not in the Motif Atlas

Homologous match to HL_5J7L_154

Geometric discrepancy: 0.2901

The information below is about HL_5J7L_154

Detailed Annotation

GNRA wlth tandem sheared

Broad Annotation

No text annotation

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

8RPY|1|A|G|712
8RPY|1|A|G|713
8RPY|1|A|U|714
8RPY|1|A|A|715
8RPY|1|A|A|716
8RPY|1|A|C|717
8RPY|1|A|A|718
8RPY|1|A|C|719

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2