HL_8RPY_036

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

GCAAAUC

Length

7 nucleotides

Bulged bases

8RPY|1|A|C|1493, 8RPY|1|A|U|1497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RPY_036 not in the Motif Atlas

Homologous match to HL_5J7L_170

Geometric discrepancy: 0.1205

The information below is about HL_5J7L_170

Detailed Annotation

Pseudoknot geometry with 3' bulge

Broad Annotation

No text annotation

Motif group

HL_57176.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

14

Unit IDs

8RPY|1|A|G|1492
8RPY|1|A|C|1493
8RPY|1|A|A|1494
8RPY|1|A|A|1495
8RPY|1|A|A|1496
8RPY|1|A|U|1497
8RPY|1|A|C|1498

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain C

Large ribosomal subunit protein uL2