HL_8RPY_066

3D structure

PDB id

8RPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137

Experimental method

ELECTRON MICROSCOPY

Resolution

2.64 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

8RPY|1|A|U|2797, 8RPY|1|A|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RPY_066 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.4482

The information below is about HL_5J7L_200

Detailed Annotation

Other HL

Broad Annotation

Other HL

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

8RPY|1|A|C|2795
8RPY|1|A|U|2796
8RPY|1|A|U|2797
8RPY|1|A|U|2798
8RPY|1|A|A|2799
8RPY|1|A|A|2800
8RPY|1|A|G|2801

Current chains

Chain A

23S ribosomal RNA

Nearby chains