HL_8RPY_072
3D structure
- PDB id
- 8RPY (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Escherichia coli 50S subunit in complex with the antimicrobial peptide Api137
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.64 Å
Loop
- Sequence
- ACCCCAUGCCGAACU
- Length
- 15 nucleotides
- Bulged bases
- 8RPY|1|B|C|35, 8RPY|1|B|G|41
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8RPY_072 not in the Motif Atlas
- Homologous match to HL_5J7L_215
- Geometric discrepancy: 0.2074
- The information below is about HL_5J7L_215
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_97756.2
- Basepair signature
- cWW-cSH-cWS-F-tSW-cSW-F-cWW-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
8RPY|1|B|A|34
8RPY|1|B|C|35
8RPY|1|B|C|36
8RPY|1|B|C|37
8RPY|1|B|C|38
8RPY|1|B|A|39
8RPY|1|B|U|40
8RPY|1|B|G|41
8RPY|1|B|C|42
8RPY|1|B|C|43
8RPY|1|B|G|44
8RPY|1|B|A|45
8RPY|1|B|A|46
8RPY|1|B|C|47
8RPY|1|B|U|48
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain 6
- Large ribosomal subunit protein bL31
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- Large ribosomal subunit protein uL5
- Chain O
- Large ribosomal subunit protein uL18
Coloring options: