HL_8RPZ_006

3D structure

PDB id

8RPZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 50S subunit in complex with the antimicrobial peptide Api88 - conformation I

Experimental method

ELECTRON MICROSCOPY

Resolution

2.44 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8RPZ|1|A|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8RPZ_006 not in the Motif Atlas

Geometric match to HL_4WF9_006

Geometric discrepancy: 0.0669

The information below is about HL_4WF9_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_30068.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8RPZ|1|A|G|194
8RPZ|1|A|A|195
8RPZ|1|A|A|196
8RPZ|1|A|A|197
8RPZ|1|A|C|198
8RPZ|1|A|A|199
8RPZ|1|A|U|200
8RPZ|1|A|C|201

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain L

Large ribosomal subunit protein uL15

Chain X

Large ribosomal subunit protein bL28